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Hi! I'm Dan, and I lead the Virtual Brain Lab project creating intuitive and interactive 3D visualizations of neuroscience data.


I'm on the job market looking for a tenure-track position to lead a research group working on data visualization, virtual reality psychophysics, and open-source tool development for neuroscience with close collaborations with experimentalists. Please get in touch if you think you have a position that fits!

Right now, I am a Washington Research Foundation Postdoctoral Fellow in the lab of Nick Steinmetz at University of Washington.



Email
Github
Publications



  • UW logo University of Washington
    Postdoc
    2020-Present
  • Stanford logo Stanford University
    PhD Cognitive Neuroscience
    2014-2019
  • BCCN logo BCCN Berlin
    Research Assistant
    2012-2013
  • Cornell University logo Cornell University
    BA Biology
    2008-2012



© Dan Birman 2023-Present . Code

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In the past, I studied visual attention using functional MRI, electrophysiology, and widefield calcium imaging. I now lead the Virtual Brain Lab, where we are developing intuitive and interactive 3D visualization tools for neuroscience.

Virtual Brain Lab

Pinpoint: multi-probe trajectory planning for Neuropixels in web browsers

The scale of modern rodent neuroscience is quickly expanding beyond the capabilities of even expert experimentalists. Pinpoint brings together large-scale anatomical atlases in an intuitive 3D environment to help experimentalists plan complex multi-probe insertions. You can learn more at Pinpoint's website

Gain, not concomitant changes in spatial receptive field properties, improves task performance in a neural network attention model

Fox, K. J.*, Birman, D.*, & Gardner, J. L. (2023). Gain, not concomitant changes in spatial receptive field properties, improves task performance in a neural network attention model. eLife.

Urchin: universal renderer for neuroscience

Neuroscience needs tools that allow researchers to quickly explore their data in its anatomical context. Urchin's intuitive API enables users to plot their data in an interactive 3D space with minimal effort. This project is just starting. You can learn more at Urchin's website

Glue: graphics library for Unity experiments

This project is just starting, the goal is to develop a modern 3D and virtual reality experiment framework for human, non-human primate, and rodent Psychophysics.

International Brain Laboratory

As I've shifted to tool development, I've started to also focus more on collaborations with experimentalists whose research I can help accelerate. With the International Brain Laboratory I have helped support multiple large-scale collaborative papers, as well as build powerful interactive visualization tools for exploring large datasets

Electrophysiology atlas

With the IBL visualization team we've developed an interactive data exploration site for the upcoming electrophysiology atlas. You can check it out now: Ephys Atlas website

Brain-wide map

Preprint coming soon...

In the meantime, you can explore the raw data on our interactive website

Reproducible electrophysiology

I've supported the development of the reproducible electrophysiology project's interactive data exploration website, check it out here: reproducible ephys website

Visual Attention

In my research I've often build computational models that link behavior and physiology. In my most recent attention project, we developed a model of spatial attention using a convolutional neural network. What we found was that changes in tuning, such as shifts or shrinkage of receptive fields, don't account well for changes in task performance in a neural network. This suggests that they might also not be responsible for performance enhancement in human spatial attention.

Gain, not concomitant changes in spatial receptive field properties, improves task performance in a neural network attention model

Fox, K. J.*, Birman, D.*, & Gardner, J. L. (2023). Gain, not concomitant changes in spatial receptive field properties, improves task performance in a neural network attention model. eLife.

As a graduate student working with Justin Gardner one of my major projects involved looking at how we can use motion visibility to understand how the brain "reads out" from sensory representations during perceptual decision making.

A flexible readout mechanism of human sensory representations

Birman, D., & Gardner, J. L. (2019). A flexible readout mechanism of human sensory representations. Nature Communications.

A quantitative framework for motion visibility in human cortex

Birman, D., & Gardner, J. L. (2018). A quantitative framework for motion visibility in human cortex. Journal of neurophysiology.

Point of No Return

In 2013 I lived in Berlin and worked in the lab of John-Dylan Haynes on this project.

We have an intuition that we "commit" to a decision at a specific moment. Despite this intuition early neuroscience researchers found that brain activity becomes predictive of our intentions far in advance, sometimes up to 10 seconds. In this experiment we showed that in reality the point of no return, after which an action is guaranteed to happen, occurs only about 200 ms before motor activity. Until the point of no return the brain has not committed with no possibility of cancelling.

Schultze-Kraft, M.*, Birman, D.*, Rusconi, M., Allefeld, C., Görgen, K., Dähne, S., ... & Haynes, J. D. (2015). The point of no return in vetoing self-initiated movements. Proceedings of the National Academy of Sciences, 201513569. *Equal author contribution. at hayneslab

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I have taught both introductory and upper-level neuroscience courses for undergraduates and graduate students. Among the highlights have been teaching a course I co-designed from scratch "Vertical Neuroscience" using rock climbing to introduce concepts in sensory and motor neuroscience, as well as leading a team of graduate and undergraduate teaching assistants for a 250-student introductory neuroscience class.

Vertical Neuroscience

Teaching

Cognitive Neuroscience

Brain Machine Interface Seminar (NEUSCI 450) Fall 2020

Instructor: Daniel Birman

Vertical Neuroscience (PSYCH 149s) - Featured in Stanford news! Summer 2019

Instructors: Daniel Birman, Corey Fernandez

Introduction to cognitive neuroscience (PSYCH 50) Winter 2019, Winter 2018, Winter 2017, Winter 2016

Instructor: Justin Gardner
Head TA: Daniel Birman
2019 TAs: Akshay Jagadeesh, Minyoung Lee, Jon Walters, Ian Eisenberg, Josiah Leong, Kawena Hirayama; Undergraduate TAs: Megumi Sano, Graham Todd, Greg Weaver, Vinh Ton, Kendall Costello, Michael Ko
2018 TAs: Akshay Jagadeesh, Minyoung Lee, Guillaume Riesen, Jon Walters; Undergraduate TAs: Emma Master, Stephanie Zhang, Kawena Hirayama, Henry Ingram, Storm Foley
2017 TAs: Minyoung Lee, Lior Bugatus, Zeynep Enkavi, Mona Rosenke, Guillaume Riesen
2016 TAs: Anna Khazenzon, Natalia Velez, Anthony Stigliani, Rosemary Le

Cognitive neuroscience - first year seminar for neuroscience graduate students (NEPR 207) Spring 2018, Spring 2017, Spring 2016

Instructors: Russ Poldrack, Justin Gardner
TA: Daniel Birman

Statistics

Methods for behavioral and social sciences (PSYCH 252) Fall 2016

Instructors: Ewart Thomas, Benoit Monin
TAs: Daniel Birman, Stephanie Gagnon, Robert Hawkins

Outdoor Education

Vertical rescue Winter 2019, Spring 2018, Winter 2018, Spring 2012, Spring 2011

Belaying from above and rappelling clinic Winter 2019, Fall 2018

Sport leading clinic Winter 2019, Fall 2018, Spring 2018, Winter 2018

Crack climbing clinic Fall 2017

Winter camping Spring 2012, 2011, 2010

Multipitch climbing: Red Rock Spring 2012

Multipitch climbing: Shawangunks Fall 2011

Mentoring

Research Advisor, University of Washington

Selina Li2023-

Jasmine Schoch2022-

Kenneth Yang2022-

Kai Nylund2021-2022

Research Advisor, Stanford University

Kai Fox2018-2022

Aarush Selvan2017-2018